Index

A

annotate_features() (isogroup.base.targeted_experiment.TargetedExperiment method)

B

build_clusters() (isogroup.base.untargeted_experiment.UntargetedExperiment method)

C

calculate_isotopologue_index() (isogroup.base.misc.Misc method) calculate_mzshift() (isogroup.base.misc.Misc static method) chemical (isogroup.base.cluster.Cluster property) Cluster (class in isogroup.base.cluster) clusterize() (isogroup.base.targeted_experiment.TargetedExperiment method)

clusters_summary() (isogroup.base.io.IoHandler method) create_clusters_df() (isogroup.base.targeted_experiment.TargetedExperiment method) (isogroup.base.untargeted_experiment.UntargetedExperiment method) create_features_df() (isogroup.base.targeted_experiment.TargetedExperiment method) (isogroup.base.untargeted_experiment.UntargetedExperiment method) create_output_directory() (isogroup.base.io.IoHandler method)

D

Database (class in isogroup.base.database)

deduplicate_clusters() (isogroup.base.untargeted_experiment.UntargetedExperiment method) duplicated_isotopologues (isogroup.base.cluster.Cluster property)

E

element_number (isogroup.base.cluster.Cluster property) expected_isotopologues_in_cluster (isogroup.base.cluster.Cluster property) Experiment (class in isogroup.base.experiment)

export_clusters() (isogroup.base.io.IoHandler method) export_features() (isogroup.base.io.IoHandler method) export_theoretical_database() (isogroup.base.io.IoHandler method)

F

Feature (class in isogroup.base.feature)

formula (isogroup.base.cluster.Cluster property) fully_labeled_enhancer() (isogroup.base.untargeted_experiment.UntargetedExperiment method)

G

get_atomic_mass() (isogroup.base.misc.Misc static method) get_clusters_from_name() (isogroup.base.targeted_experiment.TargetedExperiment method)

get_features_from_name() (isogroup.base.targeted_experiment.TargetedExperiment method) get_max_isotopologues_for_mz() (isogroup.base.misc.Misc static method)

H

highest_mz (isogroup.base.cluster.Cluster property)

highest_rt (isogroup.base.cluster.Cluster property)

I

initialize_experimental_features() (isogroup.base.experiment.Experiment method) initialize_theoretical_features() (isogroup.base.database.Database method) IoHandler (class in isogroup.base.io) is_adduct (isogroup.base.cluster.Cluster property) is_complete (isogroup.base.cluster.Cluster property) is_corrupted (isogroup.base.cluster.Cluster property) is_duplicated (isogroup.base.cluster.Cluster property) is_incomplete (isogroup.base.cluster.Cluster property) isogroup.base.cluster module isogroup.base.database module

isogroup.base.experiment module isogroup.base.feature module isogroup.base.io module isogroup.base.misc module isogroup.base.targeted_experiment module isogroup.base.untargeted_experiment module isotopologues (isogroup.base.cluster.Cluster property)

L

lowest_mz (isogroup.base.cluster.Cluster property)

lowest_rt (isogroup.base.cluster.Cluster property)

M

mean_mz (isogroup.base.cluster.Cluster property) mean_rt (isogroup.base.cluster.Cluster property) metabolite (isogroup.base.cluster.Cluster property) Misc (class in isogroup.base.misc) missing_isotopologues (isogroup.base.cluster.Cluster property) module isogroup.base.cluster isogroup.base.database isogroup.base.experiment isogroup.base.feature isogroup.base.io isogroup.base.misc isogroup.base.targeted_experiment isogroup.base.untargeted_experiment

P

ppm_tol (isogroup.base.experiment.Experiment property)

R

read_database() (isogroup.base.io.IoHandler method) read_dataset() (isogroup.base.io.IoHandler method)

rt_tol (isogroup.base.experiment.Experiment property) run_targeted_pipeline() (isogroup.base.targeted_experiment.TargetedExperiment method) run_untargeted_pipeline() (isogroup.base.untargeted_experiment.UntargetedExperiment method)

S

status (isogroup.base.cluster.Cluster property)

summary (isogroup.base.cluster.Cluster property)

T

TargetedExperiment (class in isogroup.base.targeted_experiment) theoretical_database() (isogroup.base.database.Database method)

tracer (isogroup.base.experiment.Experiment property) tracer_element (isogroup.base.experiment.Experiment property) tracer_idx (isogroup.base.experiment.Experiment property)

U

unlabeled_enhancer() (isogroup.base.untargeted_experiment.UntargetedExperiment method)

UntargetedExperiment (class in isogroup.base.untargeted_experiment)